rs45944562 SNP Detail

Summary

• ID
  rs45944562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131804354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTGGGTGA CTCAGCAACG CCGGCGCCTG
  GCCCTGCCTG ATAAGCCTGT GTGCCTATGT GTGAGTTTGT ACTTGGGAAT ACATCTGAGA
  AAGTGTTTGT GAACTTCCGT GTGGGCTGTC AGCATACTGG GACTTGGGGG TTGGGCCGGG
  R
  GAGGGTGAGC GTGAGTTACC TACGGAGGGT GACTATTCGT GCCCTAGAAT CAGAATGCCT
  GGCCCTGAGC TATCTGCACC TAGGGAATTT TGACCTGCCC CTGGAACCTC TGTGCTCAGG
  CACCTGTGTG TTTCCCGTTG AAGCACTGGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147472925	ENSMUSSNP2487419	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss321330385	CHEV_4_131632958	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs45944562					SNP	G	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131804354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	1479 bp distal
Epb41	erythrocyte membrane protein band 4.1	1722 bp upstream
Gm10300	predicted gene 10300	51 bp downstream
Rr1070	regulatory region 1070	within coordinates
Rr600865	regulatory region 600865	1762 bp distal
Rr600866	regulatory region 600866	1232 bp distal
Rr600867	regulatory region 600867	within coordinates
Tssr39361	transcription start site region 39361	1434 bp downstream
Tssr43633	transcription start site region 43633	1752 bp upstream
Tssr43634	transcription start site region 43634	1705 bp upstream
Tssr43635	transcription start site region 43635	1613 bp upstream
Tssr43636	transcription start site region 43636	1453 bp downstream