rs45945736 SNP Detail

Summary

• ID
  rs45945736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110369087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTTGAC TGCAGACTGG
  GGGAGTCCGC CTGTCCAGGT TGCAACTTGG AGGGACTTGG CTTGCTCTGA AGAGGCTGGT
  AGTACCTGGT CCTCTCTAGG TGGGCTGGTG TGAGACTCTA ACCTTTCAGG CCTATCCATC
  CTTAGCCCAG CCTCAAACCT GAAATCCTGA ATACAGGCGG ACTGGCTCTC ACCAGCATTG
  Y
  GTTCTTTGAG ATAAAAGGTT TGCTTTTCCT GTTCTTACTC TTGCTGAGTC CCTCTTCAGA
  TGGCCTCTGA GTCAATCCCA GATCTTGGCA GTATCTTGGG CAGGTGAAAT GTAGGCTTAG
  AATTAAGTTG GAATATACTT TTCTTTCCCA AAGCAATTCA GTGGCCTGTT TCTGTTGTCA
  AGTATATTAA TCCCTATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647322	ENSMUSSNP6760958	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss322398786	CHEV_7_117913394	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45945736					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110369087 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	within coordinates
B430319F04Rik	RIKEN cDNA B430319F04 gene	535 bp upstream
Cpgi19579	CpG island 19579	647 bp distal
Rr653308	regulatory region 653308	1664 bp distal
Rr653309	regulatory region 653309	959 bp distal
Rr653310	regulatory region 653310	259 bp distal
Rr653311	regulatory region 653311	782 bp proximal
Tssr68503	transcription start site region 68503	1780 bp downstream
Tssr68504	transcription start site region 68504	1753 bp downstream
Tssr68505	transcription start site region 68505	1724 bp downstream
Tssr68506	transcription start site region 68506	1687 bp downstream
Tssr68507	transcription start site region 68507	1246 bp downstream
Tssr68508	transcription start site region 68508	1033 bp downstream
Tssr68509	transcription start site region 68509	746 bp upstream
Tssr74265	transcription start site region 74265	515 bp upstream