rs45945922 SNP Detail

Summary

• ID
  rs45945922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC AAGAGAGGGA CCTGCACCTA
  Y
  CCTGTCCTCT CAGTCAACTC CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138742424	ENSMUSSNP878305	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324175502	CHEV_12_114668438	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45945922					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393847 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	301 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	394 bp upstream
Ighj2	immunoglobulin heavy joining 2	712 bp upstream
Ighj3	immunoglobulin heavy joining 3	1095 bp upstream
Ighj4	immunoglobulin heavy joining 4	1660 bp upstream
Tssr115504	transcription start site region 115504	within coordinates
Tssr118005	transcription start site region 118005	1680 bp upstream
Tssr118006	transcription start site region 118006	1649 bp upstream
Tssr118007	transcription start site region 118007	1603 bp upstream
Tssr118008	transcription start site region 118008	1576 bp upstream
Tssr118009	transcription start site region 118009	1565 bp upstream
Tssr118010	transcription start site region 118010	1427 bp upstream
Tssr118011	transcription start site region 118011	1329 bp upstream
Tssr118012	transcription start site region 118012	1094 bp upstream
Tssr118013	transcription start site region 118013	1079 bp upstream
Tssr118014	transcription start site region 118014	975 bp upstream
Tssr118015	transcription start site region 118015	879 bp upstream
Tssr118016	transcription start site region 118016	725 bp upstream
Tssr118017	transcription start site region 118017	385 bp upstream
Tssr118018	transcription start site region 118018	149 bp downstream
Tssr118019	transcription start site region 118019	166 bp downstream
Tssr118020	transcription start site region 118020	222 bp downstream
Tssr118021	transcription start site region 118021	362 bp downstream
Tssr118022	transcription start site region 118022	394 bp downstream
Tssr118023	transcription start site region 118023	559 bp downstream