rs45946189 SNP Detail

Summary

• ID
  rs45946189
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48032444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAAGTAC TCCTAGCTAC
  CAAAAAGATA CAGCAGTATG CAGCCTGGGA AGTTGATAAG GACTCGGCCT ATCTTAATGC
  ATGAAAACGT GTTCCTGTGG CAATCCAACA TGATAAGGTC AGAACAGAAG TTGCCTTGGC
  ACAGGAAATG TGGCTGTGTT AAAAACCTAA GTATGTACAA TAAAGGTTGC TGGGTAATTT
  W
  AAAAAGACAC CTTGATTTTT TTTTTTGATT TTTTAAAAAT CATTTTATTT TCTCTCTTTT
  TGTTGATGTT GGTTCTTGAA CCCAGGGTCT CATGGATGCT AGCAAGCACC CTATTAGTGA
  TTGACACTCC AGACCCAGCT TGATCTTCAT AAAAACTCAT GTGTGTGTGT GTGATTTTAA
  ATGAAACAAA TGAAACTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145708696	ENSMUSSNP7204053	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss325406490	CHEV_17_47858468	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45946189					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48032444 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr12	DNA Segment, Chr 17, Derry C. Roopenian 12	1069 bp proximal
D17Mit66	DNA segment, Chr 17, Massachusetts Institute of Technology 66	1056 bp proximal
Gm65768	predicted gene, 65768	1726 bp upstream