rs45947517 SNP Detail

Summary

• ID
  rs45947517
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54042419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGATACT TCGGAATTTA TGATTGTTGC TGTTAAAATT
  AGAACACAAG AATAGATTCA CCATAGAGGT CAAACAACAC GGCGGGGGTC GGGGAAGCTC
  T
  TCCGTGCTAG AATGGGCTGC AGTTAGACTA TAGGGCATTT TCTTCATTAG TGATTGATGG
  GGAAGGGCCC AGCCTATTGT GGGTCGTTCC ATTCCCTGG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139548773	ENSMUSSNP6660405	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45947517					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54042419 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Rr492107	regulatory region 492107	1009 bp distal
Rr492108	regulatory region 492108	290 bp distal
Rr492109	regulatory region 492109	519 bp distal
Rr492110	regulatory region 492110	1222 bp proximal
Rr492111	regulatory region 492111	1436 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav17	T cell receptor alpha variable 17	1677 bp upstream
Tssr125501	transcription start site region 125501	1501 bp upstream
Tssr125502	transcription start site region 125502	1535 bp upstream