rs45947784 SNP Detail

Summary

• ID
  rs45947784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52650393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCACTTA GCTGCCACAC
  ATTTCTCAAG CTCCCACACA GACGTAGGAG AACAGCGAGC CTCCCAGCGT GCCGGATAGC
  GGACTGCTTA GAGAACTCAC TCCCCTCCCC AGGCCTCTAG AGGAAGGCTC TTACCCAACA
  TGCACCAGGA GCTAATTTGC ATAACCCCAA GGTAAACCAC ACGGACCCAC GCCGCCAGCG
  Y
  GATCCCCACT AAGCAGCAGG GGTTCATGAG CATAGCTACA CAGTTTCACT GAAAAAACTT
  TTTCTTTGTT CCCGGGTTTA CTGGGAGGCT AGGAGAAAAA CGCGGGTCAA AGTCACCCTA
  ACTTAAAAAG TCAGGAATTC TTCGTCCTTA TATAGTCCAC GGCTAGACAC TACGATCGTG
  CTCGCTTCGG CAGCACATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137738336	ENSMUSSNP3001620	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45947784					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52650393 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	1288 bp upstream
Cpgi4596	CpG island 4596	within coordinates
Cpgi4597	CpG island 4597	1031 bp proximal
Gm23296	predicted gene, 23296	875 bp downstream
Gm24859	predicted gene, 24859	178 bp upstream
Gm35239	predicted gene, 35239	1227 bp upstream
Gm59577	predicted gene, 59577	815 bp downstream
Rr369517	regulatory region 369517	1074 bp upstream
Rr403283	regulatory region 403283	43 bp upstream
Rr403284	regulatory region 403284	806 bp upstream
Rr466025	regulatory region 466025	1303 bp distal
Rr466026	regulatory region 466026	727 bp distal
Rr466027	regulatory region 466027	744 bp proximal
Rr466028	regulatory region 466028	1273 bp proximal
Tssr116285	transcription start site region 116285	1262 bp upstream
Tssr116286	transcription start site region 116286	1239 bp upstream