rs45948797 SNP Detail

Summary

• ID
  rs45948797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28854224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCACATG TTCTCACCCA
  TCGGGATGCA TCCAGCTGCG AGTTAAGGAG GGGCTTCATG GACTCCGGGG GCAGGGACGG
  CAGCAGCTCA GAGATCTGGT GGGAGAATCA TTAGAAGCCA GTGAGACACA AACAGGATGG
  ACCTTCTCAG GGGCTCTAGT TTCCCTCAAC CCTGTGAACC TGGGTCTCAG AAGTGTTAAC
  R
  ACTTTTGCCA ACTTGACAAT TGCTATTGGA TATAGGCGTG CCCAGCCCAC TCTGGGCCTG
  GGCTGTATAA GAGGTAGCTG AACAAGCCGG GAGGCATGTG CTAGTAAACG GTTGTCCTCC
  ATGGCTGGCT TGAGGCTTGG GTTCCTGCCT CAGTTTCCTT CAACGGTGGG CTGTAACTTG
  TGAAGGGAAA CAAACGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60987108	NES16140790	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45948797					SNP	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987108	NES16140790	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28854224 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	881 bp upstream
Cpgi18740	CpG island 18740	500 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	1654 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	838 bp downstream
Rr400219	regulatory region 400219	1313 bp upstream
Rr644490	regulatory region 644490	571 bp distal
Rr644491	regulatory region 644491	391 bp proximal
Rr644492	regulatory region 644492	903 bp proximal
Rr644493	regulatory region 644493	1374 bp proximal
Rr644494	regulatory region 644494	1397 bp proximal
Rr644495	regulatory region 644495	1522 bp proximal
Tssr65599	transcription start site region 65599	844 bp upstream
Tssr65600	transcription start site region 65600	872 bp upstream
Tssr65601	transcription start site region 65601	945 bp upstream
Tssr71610	transcription start site region 71610	798 bp downstream
Tssr71611	transcription start site region 71611	823 bp downstream
Tssr71612	transcription start site region 71612	918 bp downstream
Tssr71613	transcription start site region 71613	1137 bp downstream
Tssr71614	transcription start site region 71614	1164 bp downstream
Tssr71615	transcription start site region 71615	1373 bp downstream