rs45949803 SNP Detail

Summary

• ID
  rs45949803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78430469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAACATA AAAGCTAAAC
  TTAGGCATTT GGCGAGGGGG CCTCTAACTC CATAGGCGGA AGTCTTGGCG ATGGCCTTCA
  AGGTGTACCA TGAGAGAGAT GAGAAAGCCC AAAAACAAAA ACACTGCAAG CTGGCAAAGG
  CTGTCCGACC AGCTCTAGCT ACTACCCCGA ACTCCTGGCC TTCTAAGGTT CAGGGACCAC
  Y
  AGCCCCTTGC TATAGATGTG GTCAGCAAGG TCATTGGGTG AGGTTTTGCC CTACGCCCCA
  CAAGCCAAGG GGACCGTGTC CTAAGTGCCG TCAGGAGGGA CATTGGGCTG TCGATAGCCC
  TCGTGTTGCA CAGAACAGAG GGACATCCGG TCCAGGTACT CCTCCAGCTG ACCGCCTAGG
  CTTGGCTATG GGTGACCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136668116	ENSMUSSNP6141007	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss323016431	CHEV_9_78370994	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45949803					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78430469 () rs orientation: forward

Symbol	Name	Function Class
Gm47430	predicted gene, 47430	1030 bp downstream
Gm69163	predicted gene, 69163	1832 bp upstream
Rr383643	regulatory region 383643	1256 bp upstream