rs45950378 SNP Detail

Summary

• ID
  rs45950378
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61121700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CGGGTGAGCG CTCCACGGGC CAAGGGGGTT TCTCTGAGCT
  CCTTTAGGCC AGCAGAGCCC ATGTGTCAGT GTGGCAGCAT TGTCCCCCGT CCCACCCCCC
  A
  CCCCCCCCCA CACACACACA CAGTAGAGAC CAGCAAACTC CTCTGGTTTG CTTTTGCTTG
  AGACTGCCCA GATGTTGACC TGAGATTTTC CGTGCTAAAT C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147252165	ENSMUSSNP6500635	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs45950378					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61121700 () rs orientation: forward

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	476 bp downstream
Rr538733	regulatory region 538733	773 bp distal
Rr538734	regulatory region 538734	399 bp proximal
Rr538735	regulatory region 538735	666 bp proximal
Rr538736	regulatory region 538736	1088 bp proximal
Tssr151389	transcription start site region 151389	1080 bp downstream
Tssr151390	transcription start site region 151390	843 bp downstream
Tssr151391	transcription start site region 151391	691 bp downstream