rs45952398 SNP Detail

Summary

• ID
  rs45952398
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48768815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCAGTCAC TGTATTAGTA ATGTTTTTTA CTGCCCTGAC
  AATGGACCCA ACATAAGCAA GCAAAGAAAG GAATGGTTCG TCGGGGTCCC ATCGCAAGCC
  K
  GTTAACCACC GCGGCAAGCT GGTCACGTGG CCTCTTCAGT CAAGCATTGG AGAAAGAGAT
  AGTTCTCGCT ACTCCCATTT GTTTTTCCCA CCTCTGTAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62766554	NES17348262	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T	T	G		G	G	G		G
ss145717298	ENSMUSSNP7071943	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T					T
ss325408745	CHEV_17_48601112	CHEVERUD	SCREENING_POP	f	SNP										G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs45952398					SNP	G	G	T	T	T	G	T	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62766554	NES17348262	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48768815 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr370279	regulatory region 370279			324 bp upstream
Rr528302	regulatory region 528302			1266 bp distal
Rr528303	regulatory region 528303			91 bp distal
Tssr145120	transcription start site region 145120			568 bp upstream
Unc5cl	unc-5 family C-terminal like			Intron
				Noncoding-Transcript-Variant