rs45952404 SNP Detail

Summary

• ID
  rs45952404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9672297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTAGTAT TTTTTTAAAG
  AAAGGATATC TGCTCACTGA TAATCTGGGG GACTCTTCCC ATTTTGAGTC AGAAGAGCCT
  CAGTTCTTGC TAAGAGGGGA CAAAGGAGGG AGACCTGCTG AACCAGCCAC TAAAGCCTGC
  CCTTCACTCT CTGTGCTTTA AACAACTCTG GTGTGGTCAC TGGCTCCACT CAGGAAGGCC
  R
  GTGAGAGATG CACAAATCAT GGCCCCTGTG TCATGCTTAT TTTATCCATT TGTCAGCTGC
  TGTGACGCAG TGAATTATGT GTAAGAATTC CAAAGTCATG CCCTACTGTG TTCTAGATTA
  GCACCTGGCA CAAAGTAGGT GCTCAATAAG TATCTGTCGA ACACATGACA TATAGAAATG
  TAAATTTATT TGTTATGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134576760	ENSMUSSNP3921443	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320651672	CHEV_3_9607237	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45952404					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9672297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	1357 bp proximal
Gm56803	predicted gene, 56803	1526 bp upstream
Rr78141	regulatory region 78141	503 bp proximal
Tssr28346	transcription start site region 28346	1566 bp upstream
Tssr28347	transcription start site region 28347	1589 bp upstream
Zfp704	zinc finger protein 704	within coordinates