rs45954149 SNP Detail

Summary

• ID
  rs45954149
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85564499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG TCTCATCCCT GCCCTCCACG
  K
  TCTCTGTCCA GCCTCTCTGG GAAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss145395107	ENSMUSSNP4338878	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
ss322752016	CHEV_8_87361769	CHEVERUD	SCREENING_POP	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs45954149					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85564499 () rs orientation: forward

Symbol	Name	Function Class
Gm64216	predicted gene, 64216	113 bp upstream
Rad23a	RAD23 homolog A, nucleotide excision repair protein	within coordinates
Rr666631	regulatory region 666631	within coordinates
Tssr82172	transcription start site region 82172	694 bp downstream
Tssr82173	transcription start site region 82173	729 bp downstream
Tssr82174	transcription start site region 82174	756 bp downstream