rs45954422 SNP Detail

Summary

• ID
  rs45954422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:52254786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGTATT GATTTTCCAT
  TGTCAACTAA AATTAGTTTC AAGGGTACAG CAATGTGTAG GAAAACTTGG GGCAAGATAG
  ATAGCAGGCA GATTATTTCC CATGCTTTCC TAAATAGCTG TCAAACTCTT GACAGATACC
  CTAGGATGTA GTCATGCAAG GGATTGCTAA AACCTCAGCA TTTCATTAAG AGCAAACTGC
  R
  GCAGGAGATA AAAGGTTGAC TGCTTAGCAT ACCCCAAAGC ACAGCAAACA CCAATATATT
  TGCAAGGATG CCCCAGGAGA GCTCAAGTGC AAAGCTTCTC AAACTGATTT ACCTTCTGTA
  AGCACACGAC AGGGAGAACC ATACAGTTCT CAGAGGTGAC CATTCCTATG TGGAAACTGA
  GATTATCATG CAGATGTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss61399761	NES16786279	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs45954422					SNP	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61399761	NES16786279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:52254786 () rs orientation: forward

Symbol	Name	Function Class
Gm47957	predicted gene, 47957	within coordinates
Rr211973	regulatory region 211973	884 bp distal
Rr211974	regulatory region 211974	584 bp proximal