rs45955007 SNP Detail

Summary

• ID
  rs45955007
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118530591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTCTTT TCCGCTCTCT
  CCCCCTAAGT TTTCTCTCCA TATATGGTGA TAGTCTCCAC TGCAGAGACT AGCTTGGACC
  AATACCTGCC TCCTGAGTTA GCTGTGTGGT ACCTTGCTCT GGTCCTGAAG GGATCTCCGG
  GGAGATTCCA CTTTTGTGGC AAAACACATC CTCCTCTTGG GGCAGTGCTG AAGCGGTTCC
  M
  GTGGCTTCCT TGATTGCTTC CCAGATGTCA TAGACCCCAC TTATCTCTTC CCTTTCCCCC
  AAACCAGTCT AGCTTTGGAG GTAGCCCCCT CCCCTGCTGT CCAAGTGGTC TGGAGGTGTC
  ACAGGTAAAA CCCAGAGCAT GTCCTCTTGG CTTCAGGGCT CTCTAGCACT CAGCCCCAGT
  TTACCTTTTT TTTGCCTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61229501	NES16855840	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45955007					SNP	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61229501	NES16855840	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118530591 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688308	regulatory region 688308	1163 bp distal
Rr688309	regulatory region 688309	46 bp distal
Tssr87646	transcription start site region 87646	1825 bp upstream
Tssr87647	transcription start site region 87647	1852 bp upstream
Tssr87648	transcription start site region 87648	1868 bp upstream
Tssr87649	transcription start site region 87649	1912 bp upstream
Tssr87650	transcription start site region 87650	1954 bp upstream
Tssr87651	transcription start site region 87651	1972 bp upstream
Tssr91958	transcription start site region 91958	337 bp downstream