rs45956079 SNP Detail

Summary

• ID
  rs45956079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84068687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC CTGCCTCTGC CGTGTAAGTA
  Y
  ACTATTGTAG CTCTTTCATT AGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss132477335	ENSMUSSNP2800604	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323769357	CHEV_11_83991363	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs45956079					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84068687 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	1313 bp proximal
Rr453130	regulatory region 453130	1007 bp proximal
Rr453131	regulatory region 453131	1568 bp proximal
Tssr103797	transcription start site region 103797	208 bp downstream
Tssr103798	transcription start site region 103798	1750 bp upstream
Tssr103799	transcription start site region 103799	1797 bp upstream
Tssr103800	transcription start site region 103800	1931 bp upstream
Tssr103801	transcription start site region 103801	1991 bp upstream