rs45956619 SNP Detail

Summary

• ID
  rs45956619
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATCATTTCAG GAATTATTAT GAAGCAGCTG TCTGCCCATT
  ATCTGAAAAA GATGGACCTT GTGGGACTTC GCAATTGTTA AGTAGCGTGG ACTCAGTGGT
  A
  GAAATGGATG GCTCACTAGG GGCTTGGTGA CCCTTGGCTG TGGGCTAATG GGGGAAGAAG
  GAGTAGCTGG GCCTAGAGAG AACAATTGAA TGTAGGGAGA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144898882	ENSMUSSNP406239	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45956619					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187342 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	342 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	495 bp downstream
Tssr7959	transcription start site region 7959	475 bp downstream
Tssr7960	transcription start site region 7960	452 bp downstream
Tssr7961	transcription start site region 7961	423 bp downstream
Tssr7962	transcription start site region 7962	263 bp downstream
Tssr7963	transcription start site region 7963	233 bp downstream
Tssr7964	transcription start site region 7964	206 bp downstream
Tssr7965	transcription start site region 7965	182 bp downstream