rs45957265 SNP Detail

Summary

• ID
  rs45957265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137382786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTCTAA AAAATTACCT
  AAAAGAAACA ACAAGGAATG TGTGTTCACG TTATTCAGTG CACAGCTTCA ACCAACAGCT
  CTCCTGAAGG CAAATCAACT CTTACAGAAA TGACTTGAAG AACACTGTGG GTTCTCTAAC
  TACTGAACCC CCAGGATGCA CCGGAGCTCA GGCTTCACAT ACACATGGTA ATAGGGGTCA
  Y
  AGTAAATGTG AGCACAGTAG ATCTTCAGCC AGAAGCCCCA TATTCCATGA ATGTATTTGG
  AAAACTTGAA GGTTCGAGTC ATTTAATGCA GAGTTAAACT GAGTAGGCTC TTCACCGCGA
  CTTGCTCCAG GGGTTATCAC AGCCAGAGAA CTGCAAAGAC ACATCATGTG TGTTGGGTGT
  GATAAAAATT AATACTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60805578	NES16482667	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs45957265					SNP	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60805578	NES16482667	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137382786 () rs orientation: forward

Symbol	Name	Function Class
Gm70880	predicted gene, 70880	within coordinates
Rr419604	regulatory region 419604	800 bp distal