rs45957634 SNP Detail

Summary

• ID
  rs45957634
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAG AAGTCGCCTC CACCTCAGTC
  S
  TAGTCCTAGG AATCCAACAG GGGTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61023709	NES16108733	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	C	G	C	G	C		G	G	G		G
ss322281153	CHEV_7_87486330	CHEVERUD	SCREENING_POP	f	SNP										G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45957634					SNP	C	G	G	G	C	G	C	G	C	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61023709	NES16108733	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	946 bp distal
Cpgi19332	CpG island 19332	1439 bp proximal
Hddc3	HD domain containing 3	1660 bp upstream
Rr400403	regulatory region 400403	1043 bp downstream
Rr400404	regulatory region 400404	1499 bp upstream
Rr649870	regulatory region 649870	735 bp distal
Rr649871	regulatory region 649871	1076 bp distal
Rr649872	regulatory region 649872	407 bp distal
Rr649873	regulatory region 649873	1179 bp proximal
Rr649874	regulatory region 649874	1623 bp proximal
Tssr67435	transcription start site region 67435	1647 bp upstream
Tssr67436	transcription start site region 67436	1721 bp upstream
Tssr73215	transcription start site region 73215	1434 bp upstream
Tssr73216	transcription start site region 73216	1294 bp upstream
Tssr73217	transcription start site region 73217	1234 bp upstream
Tssr73218	transcription start site region 73218	1213 bp upstream
Unc45a	unc-45 myosin chaperone A	444 bp upstream