rs45957706 SNP Detail

Summary

• ID
  rs45957706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:21766253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGAGACAG AGTAGGGCCG
  ATGGATTAGG CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ATGTGTGTGT
  GTGTTGTGGG GAGGAGGGGA TTAGCCTCAA GTACTATAGA ATGTGGATGA TGAGCTGTGT
  CCACAAAATG GTGATTTTCT CTCCCTGGTA ACTCTCAAGA AAGTTCTAAG ATAGGCTTGT
  R
  CCATGTATGC TGCAGAGCTT TGGGAGGCTG TGAGAGGCGG CCAGCAGAAT TCTGAGGAAC
  TACTACAGTG TAGCTGCCAG TTTCACACTG GGGAGGACAG AAGATGGGCT CCTTCCTGTT
  CAAAGAGCTT CTCGAGGTCA AGGTCAGACA GTGAGAAGAG GAAGATGGAA GCAGGGCAGG
  AAGACCAAAA ACTCAAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61257333	NES16877084	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45957706					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61257333	NES16877084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21766253 () rs orientation: forward

Symbol	Name	Function Class
Rr428788	regulatory region 428788	754 bp distal
Sgk1	serum/glucocorticoid regulated kinase 1	within coordinates