rs45959337 SNP Detail

Summary

• ID
  rs45959337
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115097988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTATTACA CACACACACA
  CACACACACA CACACACACA CACACACACA CACAGAGGCT TGGAAAACTA TCAGAAGAAT
  CAGTTGAAAC TTTGAAGGTA CTCATCACAC CCCAGACTAA TCAACTCTGT GCTAATACTT
  GAACATAAAC TCCACCCAAA TCCTTGGCTG ACATATATTT ATGCAGACAG TGATCTTTAA
  K
  AAGCTAAATT GAATTAGAAA GGTTAGAAAT AAAAATAACA GTAGATACAC TGCTCTAAAA
  CACCACAGAG TTGCCAGCTT TAGTTCTGGT TTAACAATCC AGCATAGCTC AGAAAAATGA
  AACAAAATCC AAAGTTTTAG CACTCCCTGT AATGCTATTT CACCAGGAGT CTAAGGATGG
  AGCCATGTTC GGGGAGAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61227180	NES16842575	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45959337					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61227180	NES16842575	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115097988 () rs orientation: forward

Symbol	Name	Function Class
Rr193053	regulatory region 193053	1988 bp distal
Stt3b	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	within coordinates