rs45959567 SNP Detail

Summary

• ID
  rs45959567
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4760960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCATCCT GAGAAACCTA
  ACAATACCTT GTCTCAAAAA AATTTTATTA AAAAAATCTT TAAAAAGAAA AAAGTTGAGA
  AGACTGCACA TCCCCAGACC ACAGGACTCA CTCGGTCTCC ATTAGAGCAT CTCAAGAGTC
  TTTCTCAATA GATTAAACAG GAAATCAACC TGCTCACCAA GACAAAAGGC TTACATAGAA
  K
  TGAAATGTTG ATGAGTGGCT CACACTTTGT TATCTGATGT TGACATTTTA ACCTTGCAGT
  TTAAAAACTC TGGCCTAGGT GTGATGGCAC ACACCTTTAG TCGCCACGCT GGAGGCAGAG
  GCAGGCAGAT CCTCTGTAAG TCTAAAGCTA ACTTGGTCTA TATAGCACGA TCCAGGCCAG
  TCAGGCTACT CAATCTCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss61339097	NES16947265	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		T	G	T
ss323874772	CHEV_12_4717766	CHEVERUD	SCREENING_POP	f	SNP				T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs45959567					SNP	G	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339097	NES16947265	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4760960 () rs orientation: forward

Symbol	Name	Function Class
Gm53750	predicted gene, 53750	within coordinates
Itsn2	intersectin 2	within coordinates
Rr260648	regulatory region 260648	1160 bp distal
Rr260649	regulatory region 260649	1841 bp proximal
Rr263604	regulatory region 263604	1576 bp distal
Tssr112576	transcription start site region 112576	1376 bp upstream
Tssr112577	transcription start site region 112577	1395 bp upstream
Tssr115645	transcription start site region 115645	1255 bp downstream