rs45959590 SNP Detail

Summary

• ID
  rs45959590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:50298940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGGTAGCC ATGGAAGGAT CTTGTGTCCT GTGTGCATTC
  CTGCGGGCAG GGACAAAGCT CAGGACATTT GGCGCAGAAA ACCCGGGACC ACCTCACCAT
  Y
  GGCTAGCGCC AAAGAGAAGG CCCTCTGCTC CAGAGGAGAA GATACAGAAC CATGGCGGAG
  GTAAACTCTG AGAGACATGT ACAACAGATG CCAGAAACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139454993	ENSMUSSNP3379824	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324615156	CHEV_14_50681158	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45959590					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:50298940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6404	CpG island 6404	197 bp proximal
Gm37194	predicted gene, 37194	within coordinates
Rr491685	regulatory region 491685	within coordinates
Rr491686	regulatory region 491686	1124 bp proximal
Rr491687	regulatory region 491687	1184 bp proximal
Tssr125363	transcription start site region 125363	122 bp downstream
Tssr125364	transcription start site region 125364	797 bp upstream