rs45959929 SNP Detail

Summary

• ID
  rs45959929
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13131663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTCTTT GTGTTTCAGT
  GAATCTGGGA AAGGAAGAAG GCAGGAGGCT GTGGCTCACA CCTGAAATCC CAGCACTCAG
  GAGGCAAAGG CTGAAGGATC ACTGAAAAAA TGTGAGGCCA ACCTGAGCTA CGTAATGAGT
  TCCAGGGTTA GCTCAGGCTA TATAGACCTG AGCCTCAGCG GAAGGAAACT GGCTGTGCCT
  K
  AGCAAGAGAA CACCCGGCAG CATAACTGGA AGAAGGGATG CGGGAGGCTC ATCTATTACC
  TCAAAAAAAA GAGGAATAAG GAGATGGCTT GGCTTTTCAA AGCACTTGCT GCTCCTGCAA
  AGGACCTAAG TTCAGATCCC AGCACTGACA TCAGACAGTT TACAACCAAC TATAACTCCA
  GAGTGTTGGG CTCAGACACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60328612	NES15831475	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45959929					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60328612	NES15831475	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13131663 () rs orientation: forward

Symbol	Name	Function Class
Gm5250	predicted gene 5250	586 bp upstream
Gm37162	predicted gene, 37162	1488 bp upstream
Rr370874	regulatory region 370874	844 bp downstream
Rr407842	regulatory region 407842	1898 bp distal
Tssr12	transcription start site region 12	1626 bp upstream