rs45960994 SNP Detail

Summary

• ID
  rs45960994
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40516696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGT CTCTGTTTTT TAACCCCCCC
  M
  CACACACACA CACACAAATA CAAAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss644055638	FVB_NJ_15_40484846	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	C	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	C	C	C	C	C	C	C	A	C	A	C	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs45960994					SNP	A	C	C	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	C	C	C	C	C	C	C	A	C	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss644055638	FVB_NJ_15_40484846	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40516696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	1070 bp proximal
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	849 bp proximal
Rr501589	regulatory region 501589	1746 bp proximal
Tssr4586	transcription start site region 4586	1995 bp upstream
Tssr131170	transcription start site region 131170	1581 bp upstream
Tssr131171	transcription start site region 131171	1612 bp upstream
Tssr131172	transcription start site region 131172	1694 bp upstream
Tssr131173	transcription start site region 131173	1720 bp upstream
Tssr131174	transcription start site region 131174	1769 bp upstream
Tssr131175	transcription start site region 131175	1908 bp upstream
Tssr131176	transcription start site region 131176	1959 bp upstream
Zfpm2	zinc finger protein, multitype 2	1742 bp upstream