rs45962031 SNP Detail

Summary

• ID
  rs45962031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102489948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCTAGC AGAGCGCTGG
  AGGTGGTGGG AAAGGGGTCT GGTTTCTTTG GTAGACTAGC TGTCTTTTGA GGACCGGGAG
  GATTTAACGG AAAGGGGTGA AAAAGTGTGA AAAGAAACCG TGGAGGTTAC TTCAGAGATT
  TAAAGACAAT AAAGAATTGT CCACGGAGCC TGCAGGAAAC ACTGCCTGGG CTGCAAGGAG
  R
  GGACCAGTTG GAATGAATGA GCCAGGATCA GAGCCGGGGC GGGGCGAAGA GAAGCGCACA
  GCCTTGAATG CTAGCTTTGG GCGCGCACGG GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGGGGTG ATGATGGCAA GACCCCAGCC CAAGAGGTCT TTGCCTTTGG
  ATATTAGAAT TTCCCTGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147119752	ENSMUSSNP1580514	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45962031					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102489948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	within coordinates
Gm57687	predicted gene, 57687	97 bp upstream
Rr561713	regulatory region 561713	934 bp distal
Rr561714	regulatory region 561714	791 bp distal
Rr561715	regulatory region 561715	312 bp distal
Rr561716	regulatory region 561716	within coordinates
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	1364 bp downstream
Tssr19099	transcription start site region 19099	1292 bp downstream
Tssr19100	transcription start site region 19100	1023 bp downstream
Tssr19101	transcription start site region 19101	934 bp downstream
Tssr19102	transcription start site region 19102	908 bp downstream
Tssr19103	transcription start site region 19103	861 bp downstream
Tssr19104	transcription start site region 19104	839 bp downstream
Tssr19105	transcription start site region 19105	769 bp downstream
Tssr19106	transcription start site region 19106	751 bp downstream
Tssr19107	transcription start site region 19107	731 bp downstream
Tssr19108	transcription start site region 19108	695 bp downstream
Tssr19109	transcription start site region 19109	653 bp downstream
Tssr19110	transcription start site region 19110	371 bp downstream