rs45962408 SNP Detail

Summary

• ID
  rs45962408
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151352555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTAGTT GACTAACCTG
  GAAGTTCACA CCTTCTTGCC TGACAGAGAT GTCACCAGAA AAACATTTAA CCTTTAGCTT
  TCCTCCTGCT TCCCAGGATG TTGGTTCTAA TCTAAACACA CAGACAGGAA TCTAGTTAGC
  ACAGCCATCC TCTGAGAAGC TCTATCCAGC AGCTGACTGA AACAGATGCA GATACTCACA
  T
  CCAAACATTG GATGGAGGTC AGGGACTCTT ATGAAAGAGT TGGCGGAAGG ATTGAAGCCC
  CTGAATGGGA TGGGAACCTC ACAGGAAGAC CAACAGAGTC AACTAACCTG GATTTCTGAG
  AGTTCTCAGA GACTGAGCCA CTAACCAAAG AACACACATG GGCTGGAGTG AGGCCCCCTG
  GCACATTTTT AGTAGACATG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss144728571	ENSMUSSNP538505	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45962408					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151352555 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	880 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	927 bp upstream
Rr117371	regulatory region 117371	1955 bp distal
Rr378823	regulatory region 378823	427 bp upstream
Tssr54686	transcription start site region 54686	928 bp upstream
Tssr54687	transcription start site region 54687	903 bp upstream