rs45962773 SNP Detail

Summary

• ID
  rs45962773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174888270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACCTGCT AACATCGTTC
  TGTCATCCAC AACTTGGTTT CTTCTAAAAC AGGAAAATTA CTATAGACAT TCCATGTAAT
  TTAATTCCAC ATACTTTACT ACTATACTAA GAGTGAGTAC ATGGAATTTT TTCCTTTACT
  CCTTTCTTTT TTTGAAATCT CATCCACCAA CTTGTTTCTA TTAATTGCTA GTATTCTACG
  R
  TGATATGGAA GTTAACTTTT TTTATGAGAA CACAGTTTAT TGTAAATTGT TTTATTTCTC
  TCTTTATTCC TTAGATTCTA AAATAAAAGC AAGTGGCCTG ATTATTTATT TTTATATAAA
  TAATTATTTA TATAATTAAA ATAATTATTT AATTTTTTTT CCTTTGGAAG GGATGATTGT
  TTTGAGACGA TAGTATTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60347199	NES15840953	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45962773					SNP	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60347199	NES15840953	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174888270 () rs orientation: forward

Symbol	Name	Function Class
6330418B08Rik	RIKEN cDNA 6330418B08 gene	1253 bp downstream
Rgs7	regulator of G protein signaling 7	Intron