rs45963769 SNP Detail

Summary

• ID
  rs45963769
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122295988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTCCCT CACACACTAC
  TGCTTGTGTG TGCAATGTGA TAGCCCCTCA GGGGACCTGA GTGGCCACTC AACTTTCTCA
  TGGCTTCCTC AAGCATAGCC ACTCCAGCAG CCTTTCTCTC TCAACAGATG AACTGCTGGG
  CGTACCCCAT CTTGTCTCAC ACGCCTGCCT TGCTCGCAGT GTAACCCACT CTTCTTTAAA
  R
  CCACAGTCGA AGAGGCATCT CAGCCTCCTC TGTGGCCGGA TAAAATGGAC AGACAACACA
  GAAGTCCTTG GTCTGCTAAG CCGGAGGTTT TGCACTCTGT TACCTGATTG AAGAAATACG
  ATGGGTTTGG TTTCATTCTT GCCGAGGTGA TTGTAGTCGT GAACCTCACG TTAGGCTTCT
  CCTCAGGTCA CAGTCTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52524808	NES15586794	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45963769					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524808	NES15586794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122295988 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	512 bp upstream
Gm63496	predicted gene, 63496	1299 bp downstream
Rr498317	regulatory region 498317	523 bp distal
Rr498318	regulatory region 498318	202 bp distal
Tssr127312	transcription start site region 127312	210 bp downstream
Tssr130315	transcription start site region 130315	493 bp upstream