rs45964600 SNP Detail

Summary

• ID
  rs45964600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116698706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCATGC TTTTATTTCT
  AACCAATAAA GTGAAAACGT TCTGATTTTC TCTACATAGA TTTTAGCTAA AAATAGCACA
  GGGTTCAGGT AGGAATTTCC TGTGCTCATG GTCAATGAAT GGCACATTAC GGTTTATACT
  ATCCCTTGAG AATGAATTTA TTTCAAAAGA AAAAGGTCTG GAGATGTGGC TCAGTGGCAC
  Y
  GTGCTTGAGC AGAGTGTGTG AAGCCATGCC TCCATCCTCA CACTGGAGAA ATGACACAGC
  AACAATTTAA ATCTATATGA AAAAAATTTC TTTCAGTTTT CCATTGTAAG CCACTAAAGG
  CTAAAACATA TGTCTTAACC AGTCCTGTTC AATAACAGAC AAGGAAAAGT TCTTTTCAGG
  AAAGGGTTTC CACCTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135675013	ENSMUSSNP1556750	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45964600					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116698706 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			1066 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			557 bp distal
Rr583801	regulatory region 583801			916 bp distal
Rr583802	regulatory region 583802			675 bp distal
Rr583803	regulatory region 583803			911 bp proximal
Tssr31391	transcription start site region 31391			1451 bp downstream
Tssr31392	transcription start site region 31392			1369 bp downstream
Tssr31393	transcription start site region 31393			1342 bp downstream
Tssr31394	transcription start site region 31394			1305 bp downstream
Tssr31395	transcription start site region 31395			659 bp downstream
Tssr31396	transcription start site region 31396			1316 bp upstream