rs45964886 SNP Detail

Summary

• ID
  rs45964886
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66827254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGCTCG CTCCTCCCCG
  TCCCAGCCAA TCTGCCCGCG CCTTGTCATC ACCCTCCGCC CCGCGAGGCT TTATGGGATT
  TGTAGTACTC TGGGAGAGCC GCGGGCGTGC CTCGCCCAAA CTGTCCGAAC AACCTCCCTG
  GATAACAAAT CTGAGTGATG TAGGGTGGTG TGTTAAGACT TTCCATCCTT ACAGGGAAAA
  K
  ACGCTTCGTT TCAAACTCCT CTTCTTTTGC CAAGGGAACT TGACTTTGTT GTTTCTTTGT
  TTATGGGCAT CTTTCAAATC CAAGACCTCG GAATCTAAGT CCTGCAGTTC GCTCATCTAC
  TTGCCTGAAC CCGGAGCTCG GCAAGCTTTC TTTGGAGATG CAAAGGTTCA CGAAGTCTGT
  GAATTAGCTG CAGAGTATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61411495	NES16800905	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	G	G	G	G		G	G	G	G		T
ss322989028	CHEV_9_66767779	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45964886					SNP	T	G	G	G	T	G	G	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61411495	NES16800905	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66827254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	29 bp distal
Rab8b	RAB8B, member RAS oncogene family	285 bp upstream
Rr368814	regulatory region 368814	386 bp downstream
Rr401489	regulatory region 401489	within coordinates
Rr681814	regulatory region 681814	within coordinates
Tssr85773	transcription start site region 85773	1110 bp downstream
Tssr85774	transcription start site region 85774	1090 bp downstream
Tssr90294	transcription start site region 90294	1595 bp upstream
Tssr90295	transcription start site region 90295	775 bp upstream
Tssr90296	transcription start site region 90296	262 bp upstream