rs45965287 SNP Detail

Summary

• ID
  rs45965287
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131229084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCTGCCA GTTGACACAG
  GGTCTCCTTA TGTAGGCAGC TGAGGTTTGC CTTGAACTTA GGATGGTCCT CCTGCCTCAG
  CCTCCTCAGT GCTAGGGTTA CAGGCATGCA CTATCATACC AGGCACTGCA ATTCGGAAAC
  TCTGAAGCAT TTGCAAGGGG TAGAGAACCC CTGTAATTAA AAAGAAGGAT GAAAGCTGCT
  S
  GGGGAATGGA GCTTCTGACA TTGGATTCCA TCTACTCTGC AGGGAAACAG CCCCCGGGGA
  ACAGCCCCTT CCTTTGCTGC CCCAATGAGG AAACACCCCA TCCTTTGATA GGCAGTCATT
  AATCTATGGA TTAAAAAACC CATACTTAGC TACCTCCCTT GATCCCTTTT GGCACATGTT
  GTAAACAGAA GAATATGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61066493	NES16063259	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	C	G	G	G	C		G	G	C	G
ss145934703	ENSMUSSNP4984939	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45965287					SNP	G	G	G	G	G	G	G	C	G	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61066493	NES16063259	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131229084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19823	CpG island 19823	974 bp proximal
Rr656477	regulatory region 656477	888 bp proximal