rs45968105 SNP Detail

Summary

• ID
  rs45968105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127128410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCCTA CTTCTCCGAG
  GCCCTCTCCC CATCCAGCCC CGCATGCTAG GGGCCTCGGA TAGGGGAACC CACAAACCCC
  ATGGATTCCT ATTGATTATC CTTTCTGACA TTCTGTAGGC ATACCATGGG GGCATAAAGG
  GTGTGTACGT GTGTGCTCTC TAACTTCGGA GGCTTGCAAT GTGATCAGAA AAACAGCCCA
  Y
  TATTCAAGAT TCAGGTAGAT AGATTTACCA TGTGGATGAG TTCAGATAAC TTAGAAGTAG
  ACCCCTAAAT GAGGAACAAG GAAAGGCTTA TTTGAGAAAA TTGCAACCTC GCCAAACCAG
  GGATAAAGGT TATGCCCCTC AAGCTTAGAC TCCTGATAAC TTTCAAGCTG TTGTCCGCCC
  CGAGCCACGT GCGTGGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60943872	NES16183191	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45968105					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60943872	NES16183191	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127128410 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	within coordinates
Cpgi18033	CpG island 18033	1886 bp distal
Cpgi18034	CpG island 18034	367 bp distal
Cpgi18035	CpG island 18035	188 bp proximal
Cpgi18036	CpG island 18036	1313 bp proximal
Cpgi18037	CpG island 18037	1832 bp proximal
Gm56941	predicted gene, 56941	1596 bp downstream
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	990 bp upstream
Tssr59021	transcription start site region 59021	1204 bp downstream
Tssr59022	transcription start site region 59022	1122 bp upstream
Tssr59023	transcription start site region 59023	1812 bp upstream
Tssr63371	transcription start site region 63371	1820 bp upstream
Tssr63372	transcription start site region 63372	1797 bp upstream
Tssr63373	transcription start site region 63373	1784 bp upstream
Tssr63374	transcription start site region 63374	771 bp upstream
Tssr63375	transcription start site region 63375	433 bp upstream
Tssr63376	transcription start site region 63376	408 bp upstream
Tssr63377	transcription start site region 63377	392 bp upstream
Tssr63378	transcription start site region 63378	1011 bp downstream