rs45968542 SNP Detail

Summary

• ID
  rs45968542
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90694329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCATAA GAATTGACCC
  ACATTACACA TTTTTTTTTA AGTTCCTCTT TGCAATTTTA GCAGGAAAAA GCAAAAAGGC
  CAAGGACCGC ATTAACTGCG CAGCTCAGGG AAACACTGAG GCTCTTTTTC TTGCCCAGGC
  AATCTGTGTG GGGAGAGCCT TGTAAAAATT CATTTTCTTA GATGGAAAAC GCTTAGCATG
  M
  AAGGTGGAAG ACAGGATCTG TTCAGAGAGG AGGGTCATCA GTGGAAAGGG GCAGAATAAA
  TCATATATCA AAAAAAATTT TAAGTATGGT GTTTGGATGC ATTGTGAGAG GAAATTCACT
  AACTAATAAT ACTAGTTAAG AGGTGAAATC CCCAAATGGG CAAAATAACC ATATTATTAC
  CAGTTAAATA TCTTATGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132592473	ENSMUSSNP3587018	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45968542					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90694329 () rs orientation: forward

Symbol	Name	Function Class
4930405D11Rik	RIKEN cDNA 4930405D11 gene	1189 bp upstream
Rr237710	regulatory region 237710	1272 bp proximal
Rr253892	regulatory region 253892	305 bp distal
Tssr104130	transcription start site region 104130	1179 bp upstream