rs45969143 SNP Detail

Summary

• ID
  rs45969143
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148529605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTT GAAGCCAACT CAAGCTTCGT
  A
  AGATTATCTT TTTGTTTGGT TTTCG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148007745	ENSMUSSNP2826343	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321420475	CHEV_4_147819257	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45969143					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148529605 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	142 bp distal
Gm23303	predicted gene, 23303	1663 bp upstream
Gm69484	predicted gene, 69484	1784 bp downstream
Rr604684	regulatory region 604684	392 bp distal
Rr604685	regulatory region 604685	within coordinates
Tssr44605	transcription start site region 44605	649 bp upstream
Tssr44606	transcription start site region 44606	409 bp upstream
Tssr44607	transcription start site region 44607	365 bp upstream
Ubiad1	UbiA prenyltransferase domain containing 1	388 bp upstream