rs45972242 SNP Detail

Summary

• ID
  rs45972242
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144177230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGGCC AGTTACCTTA
  GCATCACTTC TTTTTTTTGT TGTTTTGTTT TGTTTTTGTT TTTCGAGACA GGGTTTCTCT
  GTGTAGCCCT GGCTGTCCTG GAACTCACTC TGTAGACCAG GCTGGCCTCG AACTCAGAAA
  TTTGCCTGCC TCTGGCTCCC AAGTGCTGGG ATTAAAGGCA TGCGCCACCA CGCCCGGCAT
  T
  TTAGCATCAT TTCTATTGCT GTCATAGACA CCATGATTAA AACCACTTGG GGAGAATGGG
  GTTTACTTCA TCTTAGAGCT CTCAGATCAC AGTCTGTCAC TGAGGGAAGT CAGGGCAGGA
  ACCTGGAGGC AGGAACTGAG AAGCAGAGGC CAAGGAGGAG GCCTGCTGTC TGACTTGCTC
  CTTTTAGCTT GCTCAGCCTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321709562	CHEV_5_145001289	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45972242					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144177230 () rs orientation: forward

Symbol	Name	Function Class
2900089D17Rik	RIKEN cDNA 2900089D17 gene	1361 bp downstream