rs45973371 SNP Detail

Summary

• ID
  rs45973371
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54361212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGTGGG ACAGCTCAGC
  AGAGTCAGGA TGAATGTGTG CTCAGGTGAT CCATCCTATA GCAGTGGCTC CAGATTTAAA
  TAATGTTGAC CTTCCCTCGG CCAGATGTCT GTTCCTGGGC CAGCGCAGAA TGAACTCAGT
  GTCCTGGTCA GGGAGCATGA AGCCAGAATA AGTAGACATT CACTACAAGT GTGTCAGTCA
  K
  CACAGTCCTC TGTGGAAGGA AGGTGTCTAG ACACCAGATA CTCCTGTCAA CTTGGTCAAA
  CTGCAGAGAG AACCTGTTAC TAGAGAGAAA TCGTGATGGA GCTGTGTGGT TCCCAGTGAG
  ACCAGATCCA AGAAGAAGAA TTAACGAGAA TGTAGGACTT CCAACCTAGA GACACTTAAA
  AGTCTGCGGG AGCTCCCTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62394220	NES17237459	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45973371					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394220	NES17237459	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54361212 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292699	regulatory region 292699	1412 bp distal
Rr297183	regulatory region 297183	388 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	1514 bp downstream
Trdj1	T cell receptor delta joining 1	567 bp downstream
Tssr125530	transcription start site region 125530	1851 bp downstream
Tssr125531	transcription start site region 125531	1832 bp downstream
Tssr125532	transcription start site region 125532	1819 bp downstream
Tssr125533	transcription start site region 125533	1715 bp downstream
Tssr125534	transcription start site region 125534	1622 bp downstream
Tssr125535	transcription start site region 125535	1608 bp downstream
Tssr125536	transcription start site region 125536	1571 bp downstream
Tssr125537	transcription start site region 125537	1527 bp downstream
Tssr125538	transcription start site region 125538	1507 bp downstream
Tssr125539	transcription start site region 125539	596 bp downstream
Tssr128533	transcription start site region 128533	125 bp upstream
Tssr128534	transcription start site region 128534	1658 bp downstream