rs45973961 SNP Detail

Summary

• ID
  rs45973961
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34863696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGTTAT GCTGTCCTTT
  CTAATGGATC TCTAGGTTAT GACTCCAGTG GCTTCTACCT CGGCTACCAC TGATGTTTTT
  CAGGCAGGGA AGCCTAGTGA GCAGTGGCCA GAGCCCCACT CTATAGCCCA AGCTAGCTTC
  TAATTTGAAA GCTCCCTCCC AGCACTCCCC TAGCCGTGCA TCACCACCAC ACCTGGCTGC
  K
  CCTCACCCTT TGCATCCTGC TGCTGCAGAG CTGGCCCGCC CTGAGCAAGG CGTGGGCTGC
  TCGGAATCCC ACTGCCCAGT GCCTCTGACC TCTTGGGAAA GCCCTCAGGC CAATGAAAAG
  CCAGCTGTTC TCAGGAGCCC ACATAAAAAC CTCACCTGCT TTCCCTGACC CACCCTTTCC
  AACTAATTCC CAAATGGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60993870	NES16131300	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs45973961					SNP	T	T	T	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993870	NES16131300	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34863696 () rs orientation: forward

Symbol	Name	Function Class
Gm38988	predicted gene, 38988	within coordinates
Gm73982	predicted gene, 73982	1503 bp downstream