rs45974359 SNP Detail

Summary

• ID
  rs45974359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:181338815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGGTTTTCAG CCTGCACACG GTATTTTTCC TCTAGTAGCT
  GCCTGCTGTC CTTCAGCAGC CTTTCCCGCC GGCATTTGGT TTCTTGGATT TGCTGGCTCA
  R
  CTCCTTCATC GCCACCACTG TCTTCCTTTT TACCCGTTTC TCCAAGCTCG TTAGCAACTT
  TGGCTTGAGA TATGTATTTA GAATAGTAAG GTGTGGTGTT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146396639	ENSMUSSNP7050212	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45974359					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181338815 () rs orientation: forward

Symbol	Name	Function Class
Ccdc121rt1	coiled-coil domain containing 121, retrogene 1	Coding-Synonymous
Cpgi1136	CpG island 1136	386 bp distal
Rr424762	regulatory region 424762	191 bp proximal
Rr424763	regulatory region 424763	234 bp proximal
Rr424764	regulatory region 424764	1191 bp proximal