rs45975406 SNP Detail

Summary

• ID
  rs45975406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61861785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGATAGA TGGATGGATG
  GGTGGGTGGG TGGGTGGGTA GATGGATAGA TAAGAATAGA TGGGTAGCTA AATGATAAAA
  CCAGGTAGAT GGATGACAAC TTTATCAATA GCTAAATAGA CGACTGTACC AATGAGTGAA
  TAGGGAGACA GCCTGTACAG ATAGGTAGGT GGGGTCCGTT AATTCTCTGT CACTCTAACA
  Y
  CTACATGGAG GTGATCATCT GAAGAAAAAA GGTTCATTTG GCTTCTGGCT TTGGAGAGCA
  CCTGGCCTTT TGCTTTTAGG CCTATGCTAA GGCAGCATAC CATGGAAGGA ACATCTGGCA
  GAACAAAACC ACTCATCCCA TGGTGGGAAA GAGGTAGTCC AGGCTAGCTC ATTTGAACCC
  AGGAGAGGGT CCACATCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61280191	NES16887379	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	T		C
ss323330459	CHEV_10_61488754	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45975406					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280191	NES16887379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61861785 () rs orientation: forward

Symbol	Name	Function Class
Gm47919	predicted gene, 47919	391 bp downstream
Gm66887	predicted gene, 66887	948 bp downstream
Rr432503	regulatory region 432503	1334 bp distal