rs45975441 SNP Detail

Summary

• ID
  rs45975441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAATCAG CCAGTATAGT
  AGTAATGTGT GAGTGTTGGA TTTCTAGTTT GTAAATGTAT CACAGTAATG TAAGATTAGG
  GAACACTGGG TGAGGTAACA TCAGAACTTT TCCTACCCCT TGGCACTTTT CTGTAAAACA
  AATATTTTTT TTCTTTCAAA AAGCAAATCT TGCTGGGCAG TGATGGCGCA CACCTTTAAT
  Y
  CTAGCACTCC GGAGGCAGAG GCAGGTGGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAG
  AGTGAGTTCC TGGACAGCCA GGGCTATACA GAAAAACCCT GTCTCGAAAA CAAAACAAAA
  CAAAACAAAA GCAAAGCAAA ACAAAAGCAA AGCAAAGCTT AAAAGTTCAA AAGCATAAGG
  ACTGCAGGTC TTTCTTCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134665690	ENSMUSSNP4448838	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45975441					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1475 bp proximal
Mtfr1	mitochondrial fission regulator 1	1047 bp upstream
Rr397614	regulatory region 397614	1706 bp upstream
Tssr28500	transcription start site region 28500	1022 bp upstream
Tssr28501	transcription start site region 28501	1041 bp upstream
Tssr28502	transcription start site region 28502	1079 bp upstream
Tssr28503	transcription start site region 28503	1086 bp upstream
Tssr28504	transcription start site region 28504	1805 bp upstream
Tssr28505	transcription start site region 28505	1819 bp upstream
Tssr28506	transcription start site region 28506	1832 bp upstream
Tssr28507	transcription start site region 28507	1934 bp upstream
Tssr28508	transcription start site region 28508	1946 bp upstream