rs45976017 SNP Detail

Summary

• ID
  rs45976017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77861144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCAGTTC CCAATGATCT
  TCAGCTTTAA TGAGGTCACC AGGCAAACGT GGTGCATAGA GATTCATGCA AACAAACACA
  CACAAATACA TAATAAAATA AAACCTTTTA ATTCAAAAAA AGACTTGCAT ATTTATTAAA
  AATGCGAATG AGGGGCCAGC AAGGTGGCCA GTGGATAATG TGTTTGACCA GAGTCTGTTT
  Y
  TCAGGATCCA CATAAGGTGG AAGGACACAG ACGACTGCTC TCAGTGCTCC ACAAGCATGC
  CTTGGTACAT ATACATGCAC ACCACGCATA CACTACTACT ACTACTAATT ATTATTATTT
  CAGTAATTTC GGATAGTTCC CAGGACCTGA GGACTAAAAC CCTCTGGGTG GCTGCACTGT
  GCAAGAGCTA CCCCGGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147555342	ENSMUSSNP2453681	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45976017					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77861144 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp5f1a	ATP synthase F1 subunit alpha			324 bp upstream
Haus1	HAUS augmin-like complex, subunit 1			Intron
				mRNA-UTR
Rr393942	regulatory region 393942			within coordinates
Rr541176	regulatory region 541176			within coordinates
Rr541177	regulatory region 541177			296 bp proximal
Rr541178	regulatory region 541178			432 bp proximal
Rr541179	regulatory region 541179			523 bp proximal
Tssr152041	transcription start site region 152041			540 bp upstream