rs45976996 SNP Detail

Summary

• ID
  rs45976996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:44289200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATCATCT TTTTTTTTTT
  AAGATTTATT TATTTATTAT ATGTAAGTCA CTGTAGCTGT CTTCCGACAC TCCAGAAGAG
  GGAGTCAGAT CTCATTAGGG ATAGTTGTAA GCCACCATGT GGTTGCTGGG ATTTGAACTC
  AAGAGCAGGT AAGAGCAAGG TAAGAGCAGT CGGGTGCTCT TACCTGCTGA GCCATCTAAC
  Y
  AGCTCCATCC CAAATCATCT TATAGATAAG CCTCTGGGCA AACCTATGAG AGATTACCTA
  GATCTTAATG GGGGCAGCAC TACTGAATAA AGAGAAATCA GGTTGAGAGT AAGCATTCTC
  ATTTCCTGAC TGTGGGTGCC AGCAGAGAGA GTTACACAAG GGCACAAGGA AACTTGGGCA
  TTATACCTGT TTAGTACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147795888	ENSMUSSNP6102913	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs45976996					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:44289200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7073	CpG island 7073	1523 bp proximal
Nudcd1	NudC domain containing 1	within coordinates
Rr302868	regulatory region 302868	2000 bp distal
Rr311712	regulatory region 311712	400 bp proximal
Rr404372	regulatory region 404372	1984 bp upstream
Tssr131224	transcription start site region 131224	1596 bp upstream
Tssr134195	transcription start site region 134195	1990 bp downstream