rs45977939 SNP Detail

Summary

• ID
  rs45977939
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36646956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAA CTCTTTGAGA TTTCAAGAGA
  M
  AGAAAGTCAG TAGCCATCAC ATGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148859414	ENSMUSSNP3950073	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
ss322169136	CHEV_7_37732550	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45977939					SNP	C	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36646956 () rs orientation: forward

Symbol	Name	Function Class
Gm72473	predicted gene, 72473	within coordinates
Rr170673	regulatory region 170673	1357 bp distal
Rr170674	regulatory region 170674	1446 bp proximal
Rr406354	regulatory region 406354	1787 bp distal