rs45978417 SNP Detail

Summary

• ID
  rs45978417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:120756882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACGCCCT TGTACTGTTG
  GAACACTGGC AGAAGGCTTT AGCCATGTCA GAGCACTTAT AATAGGAAAA TACTGAAAGA
  GAGCACGTGG ATCCATAATC TAGACTAGCG CGGTAATGGA ACTTGGGAAT GAAAAATTAA
  TGTATGGGTA GAGAACACTA GACTCCAGGA GGAGAGTTTC CTTAAAACTC TTTTGCCTCA
  Y
  GAGTGACTTT TAAGCCTTTC GGCTTGTCCA GTTGACTCAA CTGGAGAGCG TAGCACATGG
  GAAATGTAAA TGAGGAAAAT ACCTAATAAA AAAGGAAAAA AGGAAAAAAA AATAGAGATT
  TCAACTGGCC TTGATGAAAA CAGTATGATA ATACCTGAAG TTATTAGAAA TAGGATTTCT
  GCATAACCTA TGTATAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134396213	ENSMUSSNP3784787	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45978417					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:120756882 () rs orientation: forward

Symbol	Name	Function Class
Rr395603	regulatory region 395603	within coordinates