rs45978549 SNP Detail

Summary

• ID
  rs45978549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34933254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA AAAGCCCAAG CGTGTTCCAC
  Y
  GTGTGGGTTA ATGAAAGTAC GTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322156703	CHEV_7_36018848	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45978549					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34933254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	730 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1520 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	941 bp downstream
Rr645337	regulatory region 645337	444 bp distal
Rr645338	regulatory region 645338	within coordinates
Rr645339	regulatory region 645339	802 bp proximal
Rr645340	regulatory region 645340	864 bp proximal
Rr645341	regulatory region 645341	1531 bp proximal