rs45978670 SNP Detail

Summary

• ID
  rs45978670
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103601719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCC TGCCTCAGTC ACGGTCACCT
  S
  CCCAAGGGCT CCCTTCCTAT GCTAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61447172	NES16827155	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	G	C		G	C	C		G
ss323161871	CHEV_9_103626850	CHEVERUD	SCREENING_POP	f	SNP						C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs45978670					SNP	G	C	C	G	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61447172	NES16827155	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103601719 () rs orientation: forward

Symbol	Name	Function Class
Gm46129	predicted gene, 46129	within coordinates
Rr192253	regulatory region 192253	319 bp distal
Rr192254	regulatory region 192254	1082 bp proximal
Rr198542	regulatory region 198542	1482 bp proximal
Tmem108	transmembrane protein 108	within coordinates