rs45978902 SNP Detail

Summary

• ID
  rs45978902
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72686452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GGGCAGGGAG GGGCTCTACG
  T
  AATTGCTTTA GGAATTCCAG CTGAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136623657	ENSMUSSNP3306030	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323002915	CHEV_9_72626977	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45978902					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72686452 () rs orientation: forward

Symbol	Name	Function Class
Gm27204	predicted gene 27204	within coordinates
Gm68819	predicted gene, 68819	1245 bp upstream
Rr197250	regulatory region 197250	1252 bp distal
Rr197251	regulatory region 197251	852 bp distal
Rr197252	regulatory region 197252	349 bp proximal