rs45979371 SNP Detail

Summary

• ID
  rs45979371
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45863240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACATGCA TTTCCTACCT
  GCACAGTGAT GGCTGCCTTC TTAGTCATCG TCTGGTACAT GCCAATGAAG GCTACATTGT
  TGTCCAGATC ATAGACAGGG CACTGTGGAG GAAGGAAGGA AGAGGCAGAT GGATGGGGAA
  CTGGGCCCTG TCCCCTCTGC TAATGTCCCA ACTACTTTCT GATGGAGGAT AAAATGACAG
  M
  CAGCTTACCA GGACATCTTG GATGGAGATG ACTGAGCAGG GGAAGGCCTT CTTGGAGGTC
  ACCTTGACAA TTACCGAGTC CACACCATCA GGAAACTCGT ATTTGAAGTA CTGAGAACAT
  AGGAAGGGAG AGTGTCATCT CAGGAGGGTG CTCTCTCTGC CCCTCCGAAG GGATCTGTCT
  CCTCCAAGGG AGGTTTCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136420864	ENSMUSSNP5361101	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45979371					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45863240 () rs orientation: forward

Symbol	Name	Function Class
Gm68914	predicted gene, 68914	690 bp downstream
Rr678012	regulatory region 678012	1669 bp proximal
Sidt2	SID1 transmembrane family, member 2	within coordinates
Tssr89292	transcription start site region 89292	917 bp downstream
Tssr89293	transcription start site region 89293	1731 bp downstream