rs45979678 SNP Detail

Summary

• ID
  rs45979678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10839248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGCTCTC CTGGCCAGCC
  ACGAACACAG CATCACAGGC CTCAGATACC TATGGCAAGG CAGAGATGTG TGGAGACACA
  AATGATAGGC ACTGATACAG CGTCACCTAC TCCAGCTATA AGCAGGGCTA CAAAATTCAA
  ATTCAGCTCT GATATCATAA ATACATGTTG TGTGGTGGTC TGGACGGGGT GGGGGGAGGT
  R
  CTCTTAGCTT AAAGTATTTT GCTGTACTAC CAAAATCCAC TCCAGGGGCG TTACTGTAGG
  TTCCCCAAGG GATGAGCTGG GCCATTTGCA TGCAACATAC ATGCTAGCAG GGTCCTCCTA
  GCAGGGTCTG GGTTGAACTC ACAACTTTAG CTCCTCGGTG CCAATCTCAG ACATTGGTGC
  TGGAGGCACC TAACAGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146046714	ENSMUSSNP4260418	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs45979678					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10839248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10624	CpG island 10624	1442 bp distal
Tmem132a	transmembrane protein 132A	within coordinates
Tssr155142	transcription start site region 155142	1986 bp downstream