rs45980214 SNP Detail

Summary

• ID
  rs45980214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80864589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGTGACCC TCGAAGGATT
  CAGCAGGGCG AAGTTAATTT TGTATGGAGG CAGTCTGCCT GGGACTTGCA GGGTTTTCTG
  TTTTGTTGTT TGTTGCGTGG CTTCTCCAGC GCCTTTTGCC TCAGCTTTTA TCAAAAGTTT
  CCAGGGCGAA GGTTTTCTGA AGGAAAGATA AAAGTTCACA GAGGCACCCG CAGCAGCTTC
  Y
  CACTTACATT TGGGATTTTG GAGTGACATC TCAGGCGTTG TAAAACAAAC TGGTATGCTG
  GGCTGCAGTG TTTGAACATA GACTCCTCTT TACTAGGAAG TTTTAAGTAT TTTGCAATTT
  TTAAAAATTG CTTACTGGGT ACTGCACACC CTCCCAGATT TGAACGATGT AGTTGACTTA
  CTTAACTGTC TTAACTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145157975	ENSMUSSNP3741592	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45980214					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80864589 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	1668 bp upstream
Cpgi19350	CpG island 19350	368 bp distal
Gm73624	predicted gene, 73624	1460 bp upstream
Pde8a	phosphodiesterase 8A	within coordinates
Tssr67494	transcription start site region 67494	1557 bp downstream
Tssr67495	transcription start site region 67495	1519 bp downstream
Tssr67496	transcription start site region 67496	1499 bp downstream
Tssr67497	transcription start site region 67497	1482 bp downstream
Tssr67498	transcription start site region 67498	1345 bp downstream
Tssr67499	transcription start site region 67499	1209 bp downstream
Tssr67500	transcription start site region 67500	1078 bp downstream
Tssr67501	transcription start site region 67501	965 bp downstream
Tssr67502	transcription start site region 67502	775 bp downstream
Tssr73321	transcription start site region 73321	1681 bp upstream
Tssr73322	transcription start site region 73322	1628 bp upstream
Tssr73323	transcription start site region 73323	1170 bp upstream
Tssr73324	transcription start site region 73324	1161 bp upstream